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	<title>Hacking Evolution &#187; decimation</title>
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	<description>Explaning Adaptation in Evolutionary Systems</description>
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		<title>Hacking Evolution &#187; decimation</title>
		<link>http://blog.hackingevolution.net</link>
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		<title>Optimization By Decimation: Explaining Adaptation in Genetic Algorithms with Uniform Crossover</title>
		<link>http://blog.hackingevolution.net/2011/03/15/optimization-by-decimation/</link>
		<comments>http://blog.hackingevolution.net/2011/03/15/optimization-by-decimation/#comments</comments>
		<pubDate>Wed, 16 Mar 2011 03:33:02 +0000</pubDate>
		<dc:creator>Keki</dc:creator>
				<category><![CDATA[analytic technique]]></category>
		<category><![CDATA[Bit Frequency Visualization]]></category>
		<category><![CDATA[building block hypothesis]]></category>
		<category><![CDATA[combinatorial optimization]]></category>
		<category><![CDATA[decimation]]></category>
		<category><![CDATA[evolutionary biology]]></category>
		<category><![CDATA[genetic algorithms]]></category>
		<category><![CDATA[hyperclimbing]]></category>
		<category><![CDATA[hyperscapes]]></category>
		<category><![CDATA[max-sat]]></category>
		<category><![CDATA[population genetics]]></category>
		<category><![CDATA[survey propagation]]></category>
		<category><![CDATA[symmetry-analysis]]></category>
		<category><![CDATA[visualization]]></category>
		<category><![CDATA[new manuscript]]></category>

		<guid isPermaLink="false">http://blog.hackingevolution.net/?p=2022</guid>
		<description><![CDATA[I&#8217;m preparing chapter 4 of my dissertation for submission to a journal. Manuscript: http://s3.amazonaws.com/burjorjee/www/hyperclimbing_hypothesis.pdf Abstract: We submit the hyperclimbing hypothesis&#8212;an explanation for adaptation in genetic algorithms with uniform crossover (UGAs). Hyperclimbing is a stochastic search heuristic that works by decimating a search space, i.e. by iteratively fixing the values of small numbers of search space [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=2022&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I&#8217;m preparing chapter 4 of my <a href="http://cs.brandeis.edu/~kekib/dissertation.html">dissertation</a> for submission to a journal.</p>
<p>Manuscript:<a href="http://s3.amazonaws.com/burjorjee/www/hyperclimbing_hypothesis.pdf"> http://s3.amazonaws.com/burjorjee/www/hyperclimbing_hypothesis.pdf</a></p>
<p>Abstract:<br />
We submit the <em>hyperclimbing hypothesis</em>&#8212;an explanation for adaptation in genetic algorithms with uniform crossover (UGAs). Hyperclimbing is a stochastic search heuristic that works by <em>decimating</em> a search space, i.e. by iteratively fixing the values of small numbers of search space attributes. Global decimation is known to be an effective way to approach large instances of hard constraint satisfaction problems. The hyperclimbing hypothesis holds that UGAs work by implicitly implementing <em>efficient</em> global decimation. Proof of concept for this hypothesis comes from the use of a novel analytic technique involving the exploitation of algorithmic symmetry. We also present experimental results that show that a simple tweak inspired by the hyperclimbing hypothesis significantly improves the performance of a UGA on an instance of Uniform Random MAX-3SAT . The hyperclimbing hypothesis suggests that other kinds of evolutionary algorithms may also work by implicitly implementing efficient global decimation.</p>
<br />Filed under: <a href='http://blog.hackingevolution.net/category/analytic-technique/'>analytic technique</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/visualization/bit-frequency-visualization/'>Bit Frequency Visualization</a>, <a href='http://blog.hackingevolution.net/category/building-block-hypothesis/'>building block hypothesis</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/'>combinatorial optimization</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/decimation/'>decimation</a>, <a href='http://blog.hackingevolution.net/category/evolutionary-biology/'>evolutionary biology</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/'>genetic algorithms</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/hyperclimbing/'>hyperclimbing</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/hyperscapes/'>hyperscapes</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/max-sat/'>max-sat</a>, <a href='http://blog.hackingevolution.net/category/evolutionary-biology/population-genetics/'>population genetics</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/survey-propagation/'>survey propagation</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/symmetry-analysis/'>symmetry-analysis</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/visualization/'>visualization</a> Tagged: <a href='http://blog.hackingevolution.net/tag/new-manuscript/'>new manuscript</a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/hackingevolution.wordpress.com/2022/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/hackingevolution.wordpress.com/2022/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/hackingevolution.wordpress.com/2022/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=2022&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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			<media:title type="html">Keki</media:title>
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		<title>Presentation at the University of Washington: Optimization by Hyperclimbing</title>
		<link>http://blog.hackingevolution.net/2010/10/12/presentation-at-the-university-of-washington-optimization-by-hyperclimbing/</link>
		<comments>http://blog.hackingevolution.net/2010/10/12/presentation-at-the-university-of-washington-optimization-by-hyperclimbing/#comments</comments>
		<pubDate>Wed, 13 Oct 2010 02:55:17 +0000</pubDate>
		<dc:creator>Keki</dc:creator>
				<category><![CDATA[analytic technique]]></category>
		<category><![CDATA[Bit Frequency Visualization]]></category>
		<category><![CDATA[building block hypothesis]]></category>
		<category><![CDATA[combinatorial optimization]]></category>
		<category><![CDATA[decimation]]></category>
		<category><![CDATA[generative fixation]]></category>
		<category><![CDATA[genetic algorithms]]></category>
		<category><![CDATA[hyperclimbing]]></category>
		<category><![CDATA[max-sat]]></category>
		<category><![CDATA[survey propagation]]></category>
		<category><![CDATA[symmetry-analysis]]></category>
		<category><![CDATA[visualization]]></category>
		<category><![CDATA[presentation]]></category>

		<guid isPermaLink="false">http://blog.hackingevolution.net/?p=1978</guid>
		<description><![CDATA[Yesterday, I presented my research on genetic algorithms at the University of Washington. Talk abstract My slides Filed under: analytic technique, Bit Frequency Visualization, building block hypothesis, combinatorial optimization, decimation, generative fixation, genetic algorithms, genetic algorithms, hyperclimbing, max-sat, survey propagation, symmetry-analysis, visualization Tagged: presentation<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=1978&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Yesterday, I presented my research on genetic algorithms at the University of Washington.</p>
<p><a href="http://www.cs.washington.edu/htbin-post/mvis/mvis?ID=984">Talk abstract</a></p>
<p><a href="http://s3.amazonaws.com/burjorjee/www/UWashPresentation.zip">My slides</a></p>
<br />Filed under: <a href='http://blog.hackingevolution.net/category/analytic-technique/'>analytic technique</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/visualization/bit-frequency-visualization/'>Bit Frequency Visualization</a>, <a href='http://blog.hackingevolution.net/category/building-block-hypothesis/'>building block hypothesis</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/'>combinatorial optimization</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/decimation/'>decimation</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/generative-fixation/'>generative fixation</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/'>genetic algorithms</a>, <a href='http://blog.hackingevolution.net/category/genetic-algorithms/'>genetic algorithms</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/hyperclimbing/'>hyperclimbing</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/max-sat/'>max-sat</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/survey-propagation/'>survey propagation</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/symmetry-analysis/'>symmetry-analysis</a>, <a href='http://blog.hackingevolution.net/category/analytic-technique/visualization/'>visualization</a> Tagged: <a href='http://blog.hackingevolution.net/tag/presentation/'>presentation</a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/hackingevolution.wordpress.com/1978/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/hackingevolution.wordpress.com/1978/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/hackingevolution.wordpress.com/1978/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=1978&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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			<media:title type="html">Keki</media:title>
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		<title>Hyperclimbing and Decimation</title>
		<link>http://blog.hackingevolution.net/2010/01/29/hyperclimbing-and-decimation/</link>
		<comments>http://blog.hackingevolution.net/2010/01/29/hyperclimbing-and-decimation/#comments</comments>
		<pubDate>Fri, 29 Jan 2010 07:01:16 +0000</pubDate>
		<dc:creator>Keki</dc:creator>
				<category><![CDATA[decimation]]></category>
		<category><![CDATA[generative fixation]]></category>
		<category><![CDATA[genetic algorithms]]></category>
		<category><![CDATA[hyperclimbing]]></category>
		<category><![CDATA[survey propagation]]></category>

		<guid isPermaLink="false">http://blog.hackingevolution.net/?p=1248</guid>
		<description><![CDATA[In recent years, probabilistic inference algorithms such as survey propagation and belief propagation have been shown to be remarkably effective at tackling large, random instances of SAT, and other combinatorial optimization problems that lie beyond the reach of previous approaches. These inference algorithms belong to a class of techniques called decimation strategies. Decimation strategies monotonically [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=1248&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>In recent years, probabilistic inference algorithms such as survey propagation and belief propagation have been shown to be remarkably effective at tackling large, random instances of SAT, and other combinatorial optimization problems that lie beyond the reach of previous approaches. These inference algorithms belong to a class of techniques called <a href="http://www.cs.cornell.edu/~kroc/pub/spDecimationSAC09.pdf">decimation strategies</a>. Decimation strategies monotonically reduce the size of a problem instance by iteratively fixing partial solutions (partial variable assignments in the case of SAT).</p>
<p>The <a href="http://cs.brandeis.edu/~kekib/dissertation.html">generative fixation hypothesis</a> essentially states that genetic algorithms work by efficiently implementing a decimation strategy called hyperclimbing.</p>
<br />Filed under: <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/decimation/'>decimation</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/generative-fixation/'>generative fixation</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/'>genetic algorithms</a>, <a href='http://blog.hackingevolution.net/category/computer-science/genetic-algorithms-computer-science/hyperclimbing/'>hyperclimbing</a>, <a href='http://blog.hackingevolution.net/category/computer-science/combinatorial-optimization/survey-propagation/'>survey propagation</a>  <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/hackingevolution.wordpress.com/1248/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/hackingevolution.wordpress.com/1248/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/hackingevolution.wordpress.com/1248/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=blog.hackingevolution.net&amp;blog=3215331&amp;post=1248&amp;subd=hackingevolution&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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			<media:title type="html">Keki</media:title>
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